Class AminoMonomer

All Implemented Interfaces:
Structure

public class AminoMonomer extends AlphaMonomer
  • Constructor Details

    • AminoMonomer

      protected AminoMonomer()
  • Method Details

    • getNitrogenAtom

      public Atom getNitrogenAtom()
      Overrides:
      getNitrogenAtom in class Group
    • getCarbonylCarbonAtom

      public Atom getCarbonylCarbonAtom()
    • getCarbonylOxygenAtom

      public Atom getCarbonylOxygenAtom()
      Overrides:
      getCarbonylOxygenAtom in class Group
    • resetHydrogenPoint

      public void resetHydrogenPoint()
    • getExplicitNH

      public Atom getExplicitNH()
    • getNHPoint

      public boolean getNHPoint(P3 aminoHydrogenPoint, V3 vNH, boolean jmolHPoint, boolean dsspIgnoreHydrogens)
    • getQuaternion

      public Quat getQuaternion(char qType)
      Overrides:
      getQuaternion in class AlphaMonomer
      Returns:
      quaternion
    • getStructureId

      public String getStructureId()
      Overrides:
      getStructureId in class Monomer
    • getProteinStructureTag

      public String getProteinStructureTag()
      Overrides:
      getProteinStructureTag in class Group
    • getBSSideChain

      public BS getBSSideChain()
      Overrides:
      getBSSideChain in class Group