Package org.jmol.jvxl.readers
Class Parameters
java.lang.Object
org.jmol.jvxl.readers.Parameters
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Field Summary
FieldsModifier and TypeFieldDescriptionboolean
P3[]
BS[]
boolean
int
int
int
boolean
short[]
float[]
int
float
float[]
int
static final float
boolean
float
Object[]
boolean
boolean
BS[]
static final int
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
int
static final int
static final int
int
float
P3[]
float[]
float
int
int
boolean
float
float
boolean
float
int
static final int
static final int
static final int
static final int
static final int
static final int
int
String[]
boolean
int[]
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
addSlabInfo
(Object[] slabObject) boolean
boolean
void
resetForMapping
(boolean haveSurface) reset some parameters at the "MAP" keyword or initiallyvoid
setEllipsoidAF
(float[] bList)
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Field Details
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STATE_UNINITIALIZED
public static final int STATE_UNINITIALIZED- See Also:
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STATE_INITIALIZED
public static final int STATE_INITIALIZED- See Also:
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STATE_DATA_READ
public static final int STATE_DATA_READ- See Also:
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STATE_DATA_COLORED
public static final int STATE_DATA_COLORED- See Also:
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state
public int state -
testFlags
public int testFlags -
isSilent
public boolean isSilent -
IS_SOLVENTTYPE
public static final int IS_SOLVENTTYPE- See Also:
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dataType
public int dataType -
SURFACE_LONEPAIR
public static final int SURFACE_LONEPAIR- See Also:
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SURFACE_RADICAL
public static final int SURFACE_RADICAL- See Also:
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atomRadiusData
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slabInfo
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defaultQMOrbitalCutoff
public static final float defaultQMOrbitalCutoff- See Also:
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colorRgb
public int colorRgb -
colorNeg
public int colorNeg -
colorPos
public int colorPos -
colorDensity
public boolean colorDensity -
iAddGridPoints
public boolean iAddGridPoints -
scale3d
public float scale3d -
functionInfo
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psi_monteCarloCount
public int psi_monteCarloCount -
MEP_MAX_GRID
public static final int MEP_MAX_GRID- See Also:
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mep_calcType
public int mep_calcType -
moData
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MO_MAX_GRID
public static final int MO_MAX_GRID- See Also:
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allowVolumeRender
public boolean allowVolumeRender -
script
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bsSelected
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bsIgnore
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bsSolvent
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func
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title
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fileName
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modelIndex
public int modelIndex -
modelInvRotation
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isXLowToHigh
public boolean isXLowToHigh -
cutoff
public float cutoff -
cutoffRange
public float[] cutoffRange -
sigma
public float sigma -
isCutoffAbsolute
public boolean isCutoffAbsolute -
isPositiveOnly
public boolean isPositiveOnly -
rangeDefined
public boolean rangeDefined -
isBicolorMap
public boolean isBicolorMap -
isSquared
public boolean isSquared -
isSquaredLinear
public boolean isSquaredLinear -
thePlane
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isContoured
public boolean isContoured -
resolution
public float resolution -
contoursDiscrete
public float[] contoursDiscrete -
contourColixes
public short[] contourColixes -
boundingBox
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bsExcluded
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contourType
public int contourType -
colorSchemeTranslucent
public boolean colorSchemeTranslucent -
colorEncoder
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usePropertyForColorRange
public boolean usePropertyForColorRange -
isPeriodic
public boolean isPeriodic -
doFullMolecular
public boolean doFullMolecular -
propertyDistanceMax
public float propertyDistanceMax -
randomSeed
public int randomSeed -
fullyLit
public boolean fullyLit -
vertexSource
public int[] vertexSource -
intersection
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origin
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steps
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points
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volumeData
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contactPair
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mapLattice
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extendGrid
public float extendGrid -
isMapped
public boolean isMapped -
showTiming
public boolean showTiming -
pointSize
public float pointSize -
probes
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isModelConnected
public boolean isModelConnected -
surfaceAtoms
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filesData
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probeValues
public float[] probeValues -
sbOut
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Constructor Details
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Parameters
public Parameters()
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Method Details
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resetForMapping
public void resetForMapping(boolean haveSurface) reset some parameters at the "MAP" keyword or initially- Parameters:
haveSurface
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setEllipsoidAF
public void setEllipsoidAF(float[] bList) -
addSlabInfo
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isInsideOut
public boolean isInsideOut() -
isFullyLit
public boolean isFullyLit()
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