Package org.jmol.script
Class SV
java.lang.Object
org.jmol.script.T
org.jmol.script.SV
- All Implemented Interfaces:
JSONEncodable
ScriptVariable class
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Nested Class Summary
Nested Classes -
Field Summary
FieldsFields inherited from class org.jmol.script.T
__, _args, abs, absolute, acos, add, addhydrogens, adpmax, adpmin, align, all, allconnected, allfloat, allowaudio, allowembeddedscripts, allowgestures, allowkeystrokes, allowmodelkit, allowmoveatoms, allowmultitouch, allowrotateselected, altloc, ambientocclusion, ambientpercent, amino, andequals, angle, angstroms, animation, animationfps, animationmode, anisotropy, antialiasdisplay, antialiasimages, antialiastranslucent, apivot, append, appendnew, appletproxy, applysymmetrytobonds, arc, area, aromatic, array, arrow, as, assign, astrType, async, atomExpressionCommand, atomicorbital, atomid, atomindex, atomname, atomno, atompicking, atomproperty, atoms, atomtype, atomtypes, atomx, atomy, atomz, audio, auto, autobond, autofps, autoplaymovie, average, axes, axescolor, axesmode, axesmolecular, axesoffset, axesorientationrasmol, axesscale, axesunitcell, axeswindow, axis, axis1color, axis2color, axis3color, axisangle, babel, babel21, back, backbone, background, backgroundcolor, backgroundmodel, backlit, backshell, balls, barb, barray, basemodel, basepair, best, beta, bin, binary, bind, bitset, blockdata, bondcount, bonded, bondingradius, bondingversion, bondmode, bondmodeor, bondorder, bondpicking, bondradiusmilliangstroms, bonds, bondset, bondtolerance, booleanparam, bottom, boundbox, boundboxcolor, branch, breakcmd, brillouin, cache, calculate, cameradepth, cancel, cap, capture, carbohydrate, cartoon, cartoonbaseedges, cartoonblockheight, cartoonblocks, cartoonladders, cartoonribose, cartoonrockets, cartoonsfancy, cartoonsteps, casecmd, catchcmd, cavity, cd, cell, celshading, celshadingpower, center, centerat, centroid, cgo, chain, chaincasesensitive, chainno, check, checkcir, chemical, chemicalshift, chirality, ciprule, ciprule6full, circle, clash, clear, clickable, clipboard, col, collapsed, colon, color, colorrasmol, colorscheme, comma, command, commands, comparator, compare, configuration, connect, connected, console, constraint, contact, context, contextdepthmax, continuecmd, contour, contourlines, contours, coord, corners, cos, count, covalentradius, create, criterion, cross, crossed, currentlocalpath, curve, cutoff, cylinder, data, dataseparator, debug, debughigh, debugscript, decimal, defaultanglelabel, defaultcmd, defaultcolorscheme, defaultdirectory, defaultdistancelabel, defaultdrawarrowscale, defaultdropscript, defaultlabelpdb, defaultlabelxyz, defaultlattice, defaultloadfilter, defaultloadscript, defaultON, defaults, defaultstructuredssp, defaulttorsionlabel, defaulttranslucent, defaultvdw, define, delay, delaymaximumms, delete, density, deprecatedparam, depth, diameter, diffusepercent, dipole, dipolescale, direction, disablepopupmenu, discrete, displacement, display, displaycellparameters, displayed, distance, distancefactor, div, divide, dna, dollarsign, domains, dot, dotdensity, dots, dotscale, dotsselectedonly, dotsurface, dotted, doubleprecision, downsample, dragselected, draw, drawfontsize, drawhover, drawing, drawpicking, dssp, dsspcalchydrogen, dssr, dynamicmeasurements, eccentricity, echo, ed, edges, edgesonly, eds, edsdiff, element, elementkeys, elemisono, elemno, ellipsoid, ellipsoidarcs, ellipsoidarrows, ellipsoidaxes, ellipsoidaxisdiameter, ellipsoidball, ellipsoiddotcount, ellipsoiddots, ellipsoidfill, elsecmd, elseif, end, endifcmd, energy, energyunits, error, eta, eval, exit, exitjmol, exportscale, expressionBegin, expressionEnd, facecenteroffset, file, filecachedirectory, filecaching, fill, filter, find, first, fixed, fixedtemp, flat, floatparam, floatproperty, flowCommand, font, fontcaching, fontscaling, fontsize, forceautobond, forcefield, forcmd, formalcharge, format, fps, fractionalrelative, fracx, fracxyz, fracy, fracz, frame, frank, from, front, frontedges, frontlit, frontonly, full, fullplane, fullylit, function, functionxy, functionxyz, fux, fuxyz, fuy, fuz, geosurface, gestureswipefactor, getproperty, gotocmd, greyscalerendering, gridpoints, group, group1, groupid, groupindex, halo, hash, hbond, hbondhxdistancemaximum, hbondnodistancemaximum, hbondsangleminimum, hbondsbackbone, hbondsrasmol, hbondssolid, helix, helix310, helixalpha, helixpi, helixstep, help, helppath, hermitelevel, hetero, hidden, hiddenlinesdashed, hide, hidenameinpopup, hidenavigationpoint, hidenotselected, highlight, highresolution, history, historylevel, hkl, homo, hover, hoverdelay, hoverlabel, hydrogen, hydrophobicity, id, identifier, identify, ifcmd, ignore, image, imagestate, implicitStringCommand, in, inchi, inchikey, increment, info, infofontsize, initialize, inline, inscode, insertion, insideout, integer, interior, intermolecular, internal, intersection, intparam, intproperty, intramolecular, intValue, invertSelected, isaromatic, iskiosk, isosurface, isosurfacekey, isosurfacepropertysmoothing, isosurfacepropertysmoothingpower, javascript, jmol, jmolinjspecview, join, json, justifymeasurements, keys, label, labelpointerwidth, language, languagetranslation, last, lattice, lcaocartoon, leadatom, left, leftbrace, leftdivide, leftparen, leftsquare, legacyautobonding, legacyhaddition, legacyjavafloat, length, lighting, line, linedata, lines, link, list, listf, load, loadatomdatatolerance, loadformat, loadligandformat, lobe, log, logcommands, logfile, loggestures, loglevel, lonepair, loop, lp, lumo, macro, macrodirectory, magneticshielding, manifest, mapproperty, mass, mathExpressionCommand, mathfunc, mathop, mathproperty, matrix, matrix3f, matrix4f, max, maxset, measure, measureallmodels, measurementlabels, measurementnumbers, measurements, measurementunits, menu, mep, mesh, meshRibbon, meshscale, message, messagestylechime, middle, min, minbonddistance, minimizationcriterion, minimizationmaxatoms, minimizationrefresh, minimizationreportsteps, minimizationsilent, minimizationsteps, minimize, minmaxmask, minpixelselradius, minset, minus, minusMinus, misc, mlp, mo, mode, model, modelbased, modelindex, modelkitmode, modify, modifyorcreate, modo, modt1, modt2, modt3, modulateoccupancy, modulation, modulationscale, modx, modxyz, mody, modz, molecular, molecule, monitorenergy, monomer, morph, mouse, mousedragfactor, mousewheelfactor, move, moveto, movie, mrc, msms, mul, mul3, multiplebondbananas, multiplebondradiusfactor, multiplebondspacing, multiprocessor, mutate, nada, name, navfps, navigate, navigatesurface, navigationdepth, navigationmode, navigationperiodic, navigationslab, navigationspeed, navx, navy, navz, nbo, nbocharges, nci, next, nihresolverformat, nmr, nmrpredictformat, nmrurlformat, noArgs, nobackshell, nocontourlines, nocross, nodebug, nodelay, nodots, noedges, nofill, nohead, noload, nomesh, none, noplane, normal, notfrontonly, notriangles, now, nucleic, obj, object, occupancy, off, offset, offsetside, omega, on, once, only, opAnd, opAND, opaque, opEQ, opGE, opGT, opIf, opLE, opLIKE, opLT, opNE, opNot, opOr, options, opToggle, opXor, orbital, orientation, origin, out, packed, palindrome, parallel, parameters, paramTypes, partialcharge, partialdots, particleradius, path, pathforallfiles, pattern, pause, pdb, pdbaddhydrogens, pdbgetheader, pdbheader, pdbsequential, per, percent, percentvdwatom, period, perpendicular, perper, perspectivedepth, perspectivemodel, phase, phi, phongexponent, picking, pickingspinrate, pickingstyle, picklabel, pivot, pivot2, planarparam, plane, platformspeed, play, playrev, plot, plot3d, plus, plusPlus, pmesh, pocket, point, point3f, point4f, pointgroup, pointgroupdistancetolerance, pointgrouplineartolerance, pointsperangstrom, polygon, polyhedra, polymer, polymerlength, pop, predefinedset, preservestate, prev, print, privat, probe, process, prompt, property, propertyatomnumbercolumncount, propertyatomnumberfield, propertycolorscheme, propertydatacolumncount, propertydatafield, PROPERTYFLAGS, propselector, protein, psi, purine, push, pymol, pyrimidine, quaternion, quaternionframe, quit, rad, radical, radius, ramachandran, random, range, rangeselected, rasmol, redo, redomove, reference, refresh, refreshing, remove, repaintwaitms, replace, reset, residue, resno, resolution, restore, restrict, resume, returncmd, reverse, reversecolor, rewind, ribbon, ribbonaspectratio, ribbonborder, right, rightbrace, rightparen, rightsquare, rmsd, rna, rna3d, rock, rocket, rocketbarrels, rotate, rotate45, rotateSelected, rotation, rotationradius, row, rubberband, rxyz, sasurface, save, saved, saveproteinstructurestate, scale, scale3d, scaleangstromsperinch, scene, screenx, screenxyz, screeny, screenz, script, scriptCommand, scriptqueue, scriptreportinglevel, search, select, selectallmodels, selected, selectedfloat, selecthetero, selecthydrogen, selection, selectionhalos, semicolon, seqcode, seqid, sequence, set, setparam, settable, shape, shapeCommand, shapely, sheet, sheetsmoothing, show, showaxes, showboundbox, showfrank, showhiddenselectionhalos, showhydrogens, showkeystrokes, showmeasurements, showmodvecs, showmultiplebonds, shownavigationpointalways, showscript, showtiming, showunitcell, showunitcelldetails, sidechain, sigma, sign, silent, sin, site, size, slab, slabbyatom, slabbymolecule, slabenabled, slabrange, smallmoleculemaxatoms, smartaromatic, smiles, smiles2dimageformat, smilesurlformat, solid, solvent, solventprobe, solventproberadius, sort, spacebeforesquare, spacefill, spacegroup, spec_alternate, spec_atom, spec_chain, spec_model, spec_model2, spec_name_pattern, spec_resid, spec_seqcode, spec_seqcode_range, specialposition, specular, specularexponent, specularpercent, specularpower, sphere, spin, spine, spinfps, spinx, spiny, spinz, split, sqrt, squared, ssbond, ssbondsbackbone, star, starwidth, state, statusreporting, stddev, stdinchi, stdinchikey, step, stereo, stereodegrees, stop, straightness, strandcount, strandcountformeshribbon, strandcountforstrands, strands, string, strparam, strproperty, strucid, strucno, structure, strutdefaultradius, strutlengthmaximum, struts, strutsmultiple, strutspacing, sub, subset, substructure, subsystem, sum, sum2, supercell, surface, surfacedistance, switchcmd, symbol, symmetry, symmetryhermannmauguin, symop, sync, syncmouse, syncscript, temperature, tensor, testflag1, testflag2, testflag3, testflag4, theta, thismodel, throwcmd, ticks, timeout, times, timestimes, title, titleformat, to, togglelabel, tok, tokenAll, tokenAnd, tokenAndFALSE, tokenAndSpec, tokenArrayClose, tokenArrayOpen, tokenArraySquare, tokenColon, tokenComma, tokenConnected, tokenCoordinateBegin, tokenCoordinateEnd, tokenDefineString, tokenDivide, tokenEquals, tokenExpressionBegin, tokenExpressionEnd, tokenIf, tokenLeftBrace, tokenLeftParen, tokenMinus, tokenMul3, tokenOff, tokenOn, tokenOpIf, tokenOr, tokenOrTRUE, tokenPlus, tokenRightBrace, tokenRightParen, tokenScript, tokenSet, tokenSetArray, tokenSetCmd, tokenSetProperty, tokenSetVar, tokenSpaceBeforeSquare, tokenSwitch, tokenTimes, top, torsion, trace, tracealpha, trajectory, transform, translate, translateSelected, translation, translucent, triangles, trim, trycmd, twistedsheets, type, unaryMinus, unbind, undo, undoauto, undomax, undomove, unitcell, unitcellcolor, unitx, unitxyz, unity, unitz, url, useminimizationthread, usenumberlocalization, user, usercolorscheme, val, valence, validation, value, vanderwaals, var, variable, variables, varray, vector, vectorscale, vectorscentered, vectorsymmetry, vectortrail, vertices, vibration, vibrationperiod, vibrationscale, vibx, vibxyz, viby, vibz, visible, visualrange, volume, w, waitformoveto, whilecmd, width, wigner, window, windowcentered, wireframe, wireframerotation, within, write, wyckoff, wyckoffm, x, xyz, y, z, zap, zdepth, zerobasedxyzrasmol, zoom, zoomenabled, zoomheight, zoomlarge, zoomTo, zshade, zshadepower, zslab
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic boolean
For legacy reasons, "x" == "X" but see isLike()arrayToList
(SV target) boolean
float
asFloat()
int
asInt()
asString()
static boolean
static SV
concatList
(SV x1, SV x2, boolean asNew) static SV
copySafely
(SV v) Make a copy if this is a variable -- if it has myName != null.static Object
Copies a hash or array deeply; invoked by Jmol script x = @a where a.type == "hash" or a.type == "varray"escape()
static float[][]
fflistValue
(T x, int nMin) static float[]
flistValue
(T x, int nMin) static Object
Accepts arguments from the format() function First argument is a format string.static float
static int
getArrayDepth
(T x) static BS
static SV
getBoolean
(boolean value) static int
getFormatType
(String format) String[]
getKeys
(boolean isAll) getList()
getMap()
getMapKeys
(int nLevels, boolean skipEmpty) static SV
static SV
getVariableAD
(double[] f) static SV
getVariableList
(Lst<?> v) static SV
getVariableMap
(Map<String, ?> x) static boolean
a LIKE "x" a is a string and equals x a LIKE "*x" a is a string and ends with x a LIKE "x*" a is a string and starts with x a LIKE "*x*" a is a string and contains xboolean
isNaN()
static boolean
static boolean
Must be updated if getVariable is updated!static int
void
static SV
newF
(float f) static SV
newI
(int i) static SV
static SV
static SV
static Object
static P4
static P3
Script variables are pushed after cloning, because the name comes with them when we do otherwise they are not mutable anyway.static Object
Safely create a JSON key - object pair, allowing for already-named arrayssortMapArray
(String key) sortOrReverse
(int arrayPt) static Object
static String[]
strListValue
(T x) static String
toArray()
toJSON()
toString()
static Object
Methods inherited from class org.jmol.script.T
addToken, completeCommand, equals, getAtomPropertiesLike, getCommandSet, getParamType, getSettableTokFromString, getTokenFromName, getTokensLike, getTokensType, getTokFromName, hashCode, i, isIDcmd, n, nameOf, o, t, tokAttr, tokAttrOr, toString2, tv
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Field Details
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vT
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vF
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vNaN
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index
public int index -
myName
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Constructor Details
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SV
public SV()
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Method Details
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newV
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newI
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newF
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newS
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newT
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copySafely
Make a copy if this is a variable -- if it has myName != null.- Parameters:
v
-- Returns:
- v or a copy of it
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isVariableType
Must be updated if getVariable is updated!- Parameters:
x
-- Returns:
- if we recognize this as a variable
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getVariable
- Parameters:
x
-- Returns:
- a ScriptVariable of the input type, or if x is null, then a new ScriptVariable, or, if the type is not found, a string version
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getVariableMap
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getVariableList
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getVariableAD
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setName
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asBoolean
public boolean asBoolean() -
asInt
public int asInt() -
asFloat
public float asFloat() -
asString
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oValue
- Parameters:
xx
-- Returns:
- Object-wrapped value
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bValue
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iValue
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fValue
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sValue
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ptValue
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pt4Value
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concatList
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escape
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unescapePointOrBitsetAsVariable
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getBoolean
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sprintf
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getFormatType
- Parameters:
format
-- Returns:
- 0: JSON, 5: base64, 12: bytearray, 22: array
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format
Accepts arguments from the format() function First argument is a format string.- Parameters:
args
-pt
- 0: to JSON, 5: to base64, 12: to bytearray, 22: to array- Returns:
- formatted string
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getBitSet
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areEqual
For legacy reasons, "x" == "X" but see isLike()- Parameters:
x1
-x2
-- Returns:
- x1 == x2
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isLike
a LIKE "x" a is a string and equals x a LIKE "*x" a is a string and ends with x a LIKE "x*" a is a string and starts with x a LIKE "*x*" a is a string and contains x- Parameters:
x1
-x2
-- Returns:
- x1 LIKE x2
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sortOrReverse
- Parameters:
arrayPt
- 1-based or Integer.MIN_VALUE to reverse- Returns:
- sorted or reversed array
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pushPop
Script variables are pushed after cloning, because the name comes with them when we do otherwise they are not mutable anyway. We do want to have actual references to points, lists, and associative arrays- Parameters:
mapKey
-value
- null to pop- Returns:
- array
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strListValue
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getArrayDepth
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fflistValue
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flistValue
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toArray
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arrayToList
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getList
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isScalar
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toJSON
- Specified by:
toJSON
in interfaceJSONEncodable
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mapGet
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mapPut
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getMap
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getMapKeys
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toString
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getKeys
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deepCopy
Copies a hash or array deeply; invoked by Jmol script x = @a where a.type == "hash" or a.type == "varray"- Parameters:
v
- hash or arrayisHash
-isDeep
- TODO- Returns:
- deeply copied variable
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sortMapArray
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safeJSON
Safely create a JSON key - object pair, allowing for already-named arrays- Parameters:
key
-property
-- Returns:
- JSON object
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isNaN
public boolean isNaN()
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