You can setup a large number of FEAT parameters in a preferences file, which the FEAT GUI will read each time you start it. For example, you can set pre-stats processing options or post-stats thresholding options such that FEAT will always use your preferences by default.
All you have to do is:
mkdir -p ~/.fslconf cp $FSLDIR/etc/fslconf/feat.tcl ~/.fslconfthen edit
~/.fslconf/feat.tcl
to change any parameters you wish. Next time you
start the FEAT GUI it will use these settings.
All the lines starting with "#" are comments and get ignored by FEAT. For yes/no settings, 0=no and 1=yes - other settings are explained in the comment lines. For further information on the options see the relevant bubble-help in the GUI or look at the detailed FEAT page.
You can also set these defaults for all users by changing parameters in the central startup file $FSLDIR/etc/fslconf/feat.tcl